Standardization of Herbal Medicine Through Biotechnology: Ensuring Consistency and Efficacy of Phytopharmaceuticals
DOI:
https://doi.org/10.35451/jfm.v9i1.3963Keywords:
biotechnology, DNA barcoding, metabolomics, phytopharmaceutical, plant tissue culture, ; standardizationAbstract
Background: Herbal medicine still faces batch-to-batch inconsistency arising from variation in botanical identity, growing conditions, harvest time and post-harvest processing, which compromises the reproducibility of clinical trials and delays the registration of phytopharmaceuticals. Objective: This narrative review aimed to summarise the contribution of biotechnological approaches to the standardization of herbal medicine during 2020 to 2026. Methods: Literature was retrieved from Scite.ai, PubMed, ScienceDirect, MDPI, Frontiers and Google Scholar using combined keywords of herbal standardization, DNA barcoding, chromatographic fingerprint, metabolomics, plant tissue culture, hairy root, chemometrics and artificial intelligence; fifty articles published between 2020 and 2026 with traceable DOIs were included. Results: Five complementary biotechnological pillars were identified, namely molecular authentication of raw material, controlled biomass supply through in vitro culture, process control through elicitation and bioreactor cultivation, chemical profiling based on fingerprinting and metabolomics, and data modelling using chemometrics and artificial intelligence. Integration of these pillars shifts the point of quality control from end-product testing to control along the entire production chain. Conclusion: Biotechnology can secure the consistency and efficacy of phytopharmaceuticals, but incomplete reference barcode databases, the shift of secondary metabolism in dedifferentiated cells, the cost of bioreactor scale-up and the absence of a regulatory framework recognising in vitro-derived biomass as an official raw material remain to be resolved.
Downloads
References
1. Balekundri A, Mannur V. Quality control of the traditional herbs and herbal products: a review. Future J Pharm Sci. 2020;6(1):67. doi:10.1186/s43094-020-00091-5
2. Wang H, Chen Y, Wang L, Liu Q, Yang S, Wang C. Advancing herbal medicine: enhancing product quality and safety through robust quality control practices. Front Pharmacol. 2023;14:1265178. doi:10.3389/fphar.2023.1265178
3. Gupta P, Pal A, Trivedi S. Review on quality control parameters for standardisation of herbal drug. J Adv Sci Res. 2021;12(3):35-41. doi:10.55218/jasr.202112305
4. Noviana E, Indrayanto G, Rohman A. Advances in fingerprint analysis for standardization and quality control of herbal medicines. Front Pharmacol. 2022;13:853023. doi:10.3389/fphar.2022.853023
5. Fernandes JM, Silvestre C, Zucolotto SM. Flavonoids as markers in herbal medicine quality control: current trends and analytical perspective. Separations. 2025;12(11):289. doi:10.3390/separations12110289
6. Kholiya PK, Bonde S, Gore V. A comprehensive review on wavelength fusion fingerprint in quality evaluation of herbal medicine. Sep Sci Plus. 2026;9(4):e70220. doi:10.1002/sscp.70220
7. Alum EU, Manjula V, Uti DE. Metabolomics-driven standardization of herbal medicine: advances, applications, and sustainability considerations. Nat Prod Commun. 2025;20(8). doi:10.1177/1934578X251367650
8. Chen S, Yin X, Han J, Sun W, Yao H, Song J, et al. DNA barcoding in herbal medicine: retrospective and prospective. J Pharm Anal. 2023;13(5):431-441. doi:10.1016/j.jpha.2023.03.008
9. Nazar N, Saxena A, Sundaresan V, Howard C, Slater RJ. Integrating DNA barcoding within an orthogonal approach for herbal product authentication: a narrative review. Phytochem Anal. 2025;36(1):7-29. doi:10.1002/pca.3466
10. Nazar N, Howard C, Slater RJ, Sgamma T. Challenges in medicinal and aromatic plants DNA barcoding: lessons from the Lamiaceae. Plants. 2022;11(1):137. doi:10.3390/plants11010137
11. Wu HY, Shaw PC. Strategies for molecular authentication of herbal products: from experimental design to data analysis. Chin Med. 2022;17(1):38. doi:10.1186/s13020-022-00590-y
12. Ichim MC, Booker A. Chemical authentication of botanical ingredients: a review of commercial herbal products. Front Pharmacol. 2021;12:666850. doi:10.3389/fphar.2021.666850
13. Palhares RM, Baratto LC, Scopel M, Mugge FLB, Brandao MGL. Medicinal plants and herbal products from Brazil: how can we improve quality? Front Pharmacol. 2021;11:606623. doi:10.3389/fphar.2020.606623
14. Chatterjee T, Ghosh B. Micropropagation of medicinal plants: a review. Int J Econ Plants. 2020;7(2):66-72. doi:10.23910/2/2020.0368
15. Danova K, Marchioni I, Pistelli L. Plant tissue culture and secondary metabolite production volume II. Plants. 2023;12(22):3862. doi:10.3390/plants12223862
16. Fazili MA, Bashir I, Ahmad M, Yaqoob U, Geelani SN. In vitro strategies for the enhancement of secondary metabolite production in plants: a review. Bull Natl Res Cent. 2022;46(1):35. doi:10.1186/s42269-022-00717-z
17. Xu F, Valappil AK, Mathiyalagan R, Tran TNA, Ramadhania ZM, Awais M, et al. In vitro cultivation and ginsenosides accumulation in Panax ginseng: a review. Plants. 2023;12(17):3165. doi:10.3390/plants12173165
18. Le TT. Root cultures for secondary products. London: IntechOpen; 2021. doi:10.5772/intechopen.94419
19. Vinterhalter B, Banjac N, Vinterhalter D, Krstic-Milosevic D. Xanthones production in Gentiana dinarica Beck hairy root cultures grown in simple bioreactors. Plants. 2021;10(8):1610. doi:10.3390/plants10081610
20. Asyakina L, Sukhikh S, Ivanova S, Prosekov A, Dyshlyuk L, Babich O. Determination of the qualitative composition of biologically-active substances of extracts of in vitro callus, cell suspension, and root cultures of the medicinal plant Rhodiola rosea. Biomolecules. 2021;11(3):365. doi:10.3390/biom11030365
21. Naz B, Afzal A, Ali H, Nisa ZU, Anwar Y, Nadeem M, et al. Melatonin-induced stress enhanced biomass and production of high-value secondary cell products in submerged adventitious root cultures of Stevia rebaudiana (Bert.). ACS Omega. 2024;9(5):5548-5562. doi:10.1021/acsomega.3c07404
22. Biswas D, Chakraborty A, Mukherjee S, Ghosh B. Hairy root culture: a potent method for improved secondary metabolite production of Solanaceous plants. Front Plant Sci. 2023;14:1197555. doi:10.3389/fpls.2023.1197555
23. Motolinia-Alcantara EA, Castillo-Araiza CO, Rodriguez-Monroy M, Roman-Guerrero A, Cruz-Sosa F. Engineering considerations to produce bioactive compounds from plant cell suspension culture in bioreactors. Plants. 2021;10(12):2762. doi:10.3390/plants10122762
24. Li Y, Hall-Ponsele AM. Plant cell strain improvement through engineering biology for industrial plant cell culture. Eng Biol. 2025;9(1):e70002. doi:10.1049/enb2.70002
25. Hein ZM, Gopalakrishna PK, Kanuri AK, Kumar S, Che Ramli MD, Mohd Nor NH, et al. Centella asiatica: advances in extraction technologies, phytochemistry, and therapeutic applications. Life. 2025;15(7):1081. doi:10.3390/life15071081
26. Mohankumar GP, Shalini RM, Desai SS. Harnessing nature's pharmacy: biotechnology advances in medicinal plant research. J Sci Res Rep. 2024;30(5):724-743. doi:10.9734/jsrr/2024/v30i51992
27. Nourani A, Popova E, Titova MV. Biotechnology based on cell cultures of higher plants. E3S Web Conf. 2021;265:04012. doi:10.1051/e3sconf/202126504012
28. Rebiai A, Ben Seghir B, Hemmami H, Zeghoud S, Amor IB, Kouadri I, et al. Quality assessment of medicinal plants via chemometric exploration of quantitative NMR data: a review. Compounds. 2022;2(2):163-181. doi:10.3390/compounds2020012
29. Valentino G, Graziani V, D'Abrosca B, Pacifico S, Fiorentino A, Scognamiglio M. NMR-based plant metabolomics in nutraceutical research: an overview. Molecules. 2020;25(6):1444. doi:10.3390/molecules25061444
30. Jahangir M, Atta-ur-Rehman, Abdel Farid IB, Rehman F, Aslam M, Bano H. NMR-based metabolomics for geographical discrimination of Adhatoda vasica leaves. Plants. 2023;12(3):453. doi:10.3390/plants12030453
31. Pacholczyk-Sienicka B, Ciepielowski G, Albrecht L. The application of NMR spectroscopy and chemometrics in authentication of spices. Molecules. 2021;26(2):382. doi:10.3390/molecules26020382
32. Imai A, Lankin DC, Godecke T, Chen SN, Pauli GF. Differentiation of Actaea species by NMR metabolomics analysis. Fitoterapia. 2020;146:104686. doi:10.1016/j.fitote.2020.104686
33. Zhang J, Guo W, Li Q, Wang Z, Liu S. Discriminant analysis of traditional Chinese medicinal properties based on holistic chemical profiling by 1H-NMR spectroscopy. Evid Based Complement Alternat Med. 2020;2020:3141340. doi:10.1155/2020/3141340
34. Shi J, Xu L, Tang C, Zhang J, Wang Y, Li H. Artificial intelligence-enabled intelligent sensory systems for quality evaluation of traditional Chinese medicine: a review of electronic nose, electronic tongue, and machine vision approaches. Molecules. 2026;31(7):1140. doi:10.3390/molecules31071140
35. Li Z, Dai Y. From biological potency absorbed components to artificial intelligence mining: a review of analytical strategies for the discovery and validation of quality marker in traditional Chinese medicine in the past decade. Guidel Stand Chin Med. 2024;2(4):156-166. doi:10.1097/GSCM.0000000000000033
36. Park SJ, Lee H, Jeon YJ, Kim S, Lee J. Development of an RGB-GE data generation and XAI-based on-site classification system for differentiating Zizyphus jujuba and Zizyphus mauritiana in herbal medicine applications. Agriculture. 2025;15(10):1022. doi:10.3390/agriculture15101022
37. Devi AM, Devi KK, Devi PP, Lisham MK, Nongdam P. Metabolic engineering of plant secondary metabolites: prospects and its technological challenges. Front Plant Sci. 2023;14:1171154. doi:10.3389/fpls.2023.1171154
38. Gao H, Pei X, Wang S, Ye C, Chen Y, Li H. Application and development of CRISPR technology in the secondary metabolic pathway of the active ingredients of phytopharmaceuticals. Front Plant Sci. 2025;15:1477894. doi:10.3389/fpls.2024.1477894
39. Mitra S, Anand U, Ghorai M, Kant N, Kumar M, Radha, et al. Genome editing technologies, mechanisms and improved production of therapeutic phytochemicals: opportunities and prospects. Biotechnol Bioeng. 2022;120(1):82-94. doi:10.1002/bit.28260
40. Zaman W, Park S. Advances in functional genomics and biotechnology for enhancing therapeutic potential of medicinal plants. Int J Mol Sci. 2026;27(10):4245. doi:10.3390/ijms27104245
41. Zhang J, Hansen LG, Gudich O, Viehrig K, Lassen LMM, Schrubbers L, et al. A microbial supply chain for production of the anti-cancer drug vinblastine. Nature. 2022;609(7926):341-347. doi:10.1038/s41586-022-05157-3
42. Faramayuda F, Mariani TS, Elfahmi, Sukrasno. Short communication: callus induction in purple and white-purple varieties of Orthosiphon aristatus (Blume) Miq. Biodiversitas. 2020;21(10):4967-4972. doi:10.13057/biodiv/d211063
43. Faramayuda F, Mariani TS, Elfahmi, Sukrasno. Phytochemical analysis of callus two varieties Orthosiphon aristatus (Blume) Miq on Murashige and Skoog media: a strategic step of secondary metabolite production. Int J Appl Pharm. 2021;13(Suppl 2):71-77. doi:10.22159/ijap.2021.v13s2.14
44. Faramayuda F, Mariani TS, Elfahmi, Sukrasno. Identification of secondary metabolites from callus Orthosiphon aristatus (Blume) Miq by thin layer chromatography. Sarhad J Agric. 2021;37(3):1081-1088. doi:10.17582/journal.sja/2021/37.3.1081.1088
45. Faramayuda F, Mariani TS, Elfahmi, Sukrasno. Chemical compound identification of two varieties cat of whiskers (Orthosiphon aristatus Blume Miq) from in vitro culture. Sarhad J Agric. 2021;37(4):1355-1363. doi:10.17582/journal.sja/2021/37.4.1355.1363
46. Faramayuda F, Mariani TS, Elfahmi, Sukrasno. Micropropagation and secondary metabolites content of white-purple varieties of Orthosiphon aristatus Blume Miq. Pak J Biol Sci. 2021;24(8):858-867. doi:10.3923/pjbs.2021.858.867
47. Faramayuda F, Mariani TS, Elfahmi, Sukrasno. Sinensetin contents of purple and white purple variety of Orthosiphon aristatus (Blume) Miq. Jordan J Biol Sci. 2022;15(1):127-132. doi:10.54319/jjbs/150117
48. Faramayuda F, Mariani TS, Elfahmi, Sukrasno. Influence of elicitation and precursors on major secondary metabolite production in cultures of purple Orthosiphon aristatus Blume Miq. Biocatal Agric Biotechnol. 2022;42:102324. doi:10.1016/j.bcab.2022.102324
49. Faramayuda F, Mariani TS, Elfahmi, Sukrasno. Plant tissue culture of cat whiskers (Orthosiphon aristatus Blume Miq): a review of secondary metabolite production and micropropagation. Pharm Educ. 2022;22(2):92-97. doi:10.46542/pe.2022.222.9297
50. Faramayuda F, Aryani Y, Suryasaputra D, Elfahmi. The role of coconut water as a biostimulant in producing immunomodulatory compounds in Curcuma xanthorrhiza: tissue culture and in silico approaches. Curr Drug Ther. 2026;21. doi:10.2174/0115748855452647260519061004
Downloads
Published
Issue
Section
License
Copyright (c) 2026 Fahrauk Faramayuda, Nita Yulianti

This work is licensed under a Creative Commons Attribution-NoDerivatives 4.0 International License.
Copyright in each article is the property of the Author.























